| read_biom2phyloseq {microbiome} | R Documentation |
Read biom and mapping files into a phyloseq-class
object.
read_biom2phyloseq(biom.file = NULL, taxonomy.file = NULL, metadata.file = NULL, ...)
biom.file |
A biom file with '.biom' extension |
taxonomy.file |
NULL the latest version has taxonomic information within the biom |
metadata.file |
A simple metadata/mapping file with .csv extension |
... |
Arguments to pass for import_biom |
Biom file and mapping files will be converted to
phyloseq-class.
phyloseq-class object.
Sudarshan A. Shetty sudarshanshetty9@gmail.com
## Not run:
biom.file <- qiita1629.biom"
meta.file <- qiita1629_mapping.csv"
p0 <- read_biom2phyloseq(biom.file = biom.file,
metadata.file = meta.file,
taxonomy.file = NULL)
## End(Not run)