| phyloseq_to_deseq2 {phyloseq} | R Documentation |
No testing is performed by this function. The phyloseq data is converted
to the relevant DESeqDataSet object, which can then be
tested in the negative binomial generalized linear model framework
of the DESeq function in DESeq2 package.
See the
phyloseq-extensions
tutorials for more details.
phyloseq_to_deseq2(physeq, design, ...)
physeq |
(Required). |
design |
(Required). A
|
... |
(Optional). Additional named arguments passed to |
A DESeqDataSet object.
vignette("phyloseq-mixture-models")
The phyloseq-extensions tutorials.
# Check out the vignette phyloseq-mixture-models for more details.
# vignette("phyloseq-mixture-models")
data(soilrep)
phyloseq_to_deseq2(soilrep, ~warmed)