taxa_summary {microbiomeutilities}R Documentation

Give taxa summary at specified taxonomic level

Description

Data frame with mean, max, median standard deviation of relative abundance.

Usage

taxa_summary(x, level)

Arguments

x

phyloseq-class object

level

Taxonomic level for which summary is required

Value

returns a data frame with relative abundance summary.

Author(s)

Contact: Sudarshan A. Shetty sudarshanshetty9@gmail.com

Examples

## Not run: 
    # Example data
    library(microbiomeutilities)
    data("zackular2014")
    p0 <- zackular2014
    p0.rel <- microbiome::transform(p0, "compositional")
    tx.sum1 <- taxa_summary(p0, "Phylum")

    tx.sum2 <- taxa_summary(p0.rel, "Phylum")
    
## End(Not run)


[Package microbiomeutilities version 0.99.02 Index]