#!/bin/bash
#SBATCH -J rSC
#SBATCH -N 1
#SBATCH --partition=genoa
#SBATCH --exclusive
#SBATCH --output=slurm-%A_%a.out

module load 2022
module load Python/3.10.4-GCCcore-11.3.0

folder1=results/superoperator/$1
folder2=results/superoperator/$1/threshold_sim

folder=$HOME/Code/SCT_paper/results/superoperator/$1
folder3=$HOME/Code/SCT_paper/results/superoperator/$1/threshold_sim
mkdir -p $folder
mkdir -p $folder3

tdir=$(mktemp -d $TMPDIR/tmp.XXXXXXX)
cd $tdir

cp -r $HOME/Code/SCT_paper $tdir
cd $tdir/SCT_paper

script=generate_data_and_figures/run_circuit_simulation_and_oopsc.py

python $script --argument_file $HOME/Code/SCT_paper/circuit_simulation/argument_file_circuit_simulation_multithreading.txt --cp_path $folder1 $2 --protocol_recipe_select $SLURM_ARRAY_TASK_ID
cp $folder1/*.csv $folder
cp $folder1/*.pkl $folder
cp $folder2/*.csv $folder3
