Title of the dataset:
Data underlying the publication: "The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool"

Creators:
Eef M. Jonkheer, 0000-0002-2608-6311, Bioinformatics Group, Wageningen University & Research
Sandra Smit, 0000-0001-5239-5321, Bioinformatics Group, Wageningen University & Research
Theo van der Lee, 0000-0002-4756-8301, Wageningen Plant Research, Wageningen University & Research
Balázs Brankovics, 0000-0003-0536-7787, Wageningen Plant Research, Wageningen University & Research
Jan M. van der Wolf, 0000-0002-9196-5419, Wageningen Plant Research, Wageningen University & Research
Robert Vreeburg, Nederlandse Algemene Keuringsdienst voor zaaizaad en pootgoed van landbouwgewassen

Related publication:
The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool

Description:
Pangenome analysis of the Pectobacterium genus, comprising 197 strains across 19 species.

Keywords:
Pectobacterium
Soft rot Pectobacteriaceae
Plant pathogen
Comparative genomics
Pangenome
Gene repertoire 
Phylogeny
Virulence

This dataset contains the following files:
genome_annotation_data.xlsx, an overview of the data including: strain names, NCBI accessions, and Biosample identifiers.
pectobacterium_genomes.zip, compressed directory with 197 Pectobacterium genome assemblies (.fna).
pectobacterium_genomes.zip, compressed directory with 197 Pectobacterium genome annotations (.gff).

Methods, materials and software:
Methods, materials and software are available in the publication.

This dataset is published under the CC BY-SA 4.0 (Attribution) license.
This license allows reusers to distribute, remix, adapt, and build upon the material in any medium or format, so long as attribution is given to the creator.
If you remix, adapt, or build upon the material, you must license the modified material under identical terms.