Hu, Yimin; Schwab, Samuel; Deiss, Silvia; Escudeiro, Pedro; Joiner, Joe et. al. (2023): Data underlying the publication: Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending. Version 1. 4TU.ResearchData. dataset. https://doi.org/10.4121/6c07e4bb-96f1-4ee0-88ef-6978bda27e5d.v1

Version 2 - 2024-04-10 (latest)

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Categories

• Physical Chemistry (incl. Structural)
• Microbiology
• Biochemistry and Cell Biology
• Biological Sciences
• Chemical Sciences

Keywords

Bacterial chromatin Bdellovibrio bacteriovorus DNA bending HBb Histones Nucleoid associated proteins

Licence

CC BY 4.0

Interoperability

• RO-Crate Metadata

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by Yimin Hu, Samuel Schwab, Silvia Deiss, Pedro Escudeiro, Joe Joiner, Marcus D. Hartmann, Andrei N. Lupas, Birte Hernandez Alvarez, Vikram Alva, Remus T. Dame

The research objective was to study how histone HBb from Bdellovibrio bacteriovorus bind and structures DNA. We have studied this with electrophoretic mobility shift assays, micrococcal nuclease assays, DNA topology assays, ligase-mediated circularisation, DAP-seq, tethered particle motion (TPM) and molecular dynamics (MD) simulations. This dataset contains the raw data of obtained root mean squared displacement (TPM) and the parameter and trajectory files of the simulations (MD).

History

• 2023-11-07 first online, published, posted

Publisher

4TU.ResearchData

Format

.xlsx, .zip, and related README .text files

Associated peer-reviewed publication

Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending

References

• https://doi.org/10.1101/2023.02.26.530074

Organizations

Department of Protein Evolution, Max Planck Institute for Biology Tübingen;
Interfaculty Institute of Biochemistry, University of Tübingen;
Leiden Institute of Chemistry, Leiden University